PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G149900.1.p
Common NameSETIT_027897mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 164aa    MW: 19642.3 Da    PI: 9.5549
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G149900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.82.7e-1630116189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                         +f+n++A++ GFs r + ++++    + ++r++vCskeg  +++  + ++ +rr+r++tr +C  +++++ +   + w+v+k    HnH++
  Seita.8G149900.1.p  30 EFFNAFARNKGFSGRGRLHTQQ----TKMSRQYVCSKEGAGQPKFLNrETMKRRPRPVTRFDCPFEVVMRHKPeMNIWYVHKYLYTHNHNF 116
                         6**************9988777....4589***********9997775688999****************999899*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1430116IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MPAHTQTLEE LEEYEYIVER TFHSEDEGYE FFNAFARNKG FSGRGRLHTQ QTKMSRQYVC  60
SKEGAGQPKF LNRETMKRRP RPVTRFDCPF EVVMRHKPEM NIWYVHKYLY THNHNFRASE  120
KRNILAYQTA GLRKYQIMDV MEKQYGGPHN VGYVIKDLYN FHF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3ZMS71e-122K3ZMS7_SETIT; Uncharacterized protein
STRINGSi027897m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-12FAR1-related sequence 5